3KK5 image
Deposition Date 2009-11-04
Release Date 2009-11-17
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3KK5
Keywords:
Title:
Crystal structure of PBCV-1 VP54 fitted into a cryo-EM reconstruction of the virophage Sputnik
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
10.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):A430L
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M
Chain Length:437
Number of Molecules:13
Biological Source:Acanthamoeba polyphaga
Ligand Molecules
Primary Citation
Structural studies of the sputnik virophage.
J.Virol. 84 894 897 (2010)
PMID: 19889775 DOI: 10.1128/JVI.01957-09

Abstact

The virophage Sputnik is a satellite virus of the giant mimivirus and is the only satellite virus reported to date whose propagation adversely affects its host virus' production. Genome sequence analysis showed that Sputnik has genes related to viruses infecting all three domains of life. Here, we report structural studies of Sputnik, which show that it is about 740 A in diameter, has a T=27 icosahedral capsid, and has a lipid membrane inside the protein shell. Structural analyses suggest that the major capsid protein of Sputnik is likely to have a double jelly-roll fold, although sequence alignments do not show any detectable similarity with other viral double jelly-roll capsid proteins. Hence, the origin of Sputnik's capsid might have been derived from other viruses prior to its association with mimivirus.

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Primary Citation of related structures