3KDP image
Deposition Date 2009-10-23
Release Date 2010-02-16
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3KDP
Keywords:
Title:
Crystal structure of the sodium-potassium pump
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sodium/potassium-transporting ATPase subunit alpha-1
Gene (Uniprot):ATP1A1
Chain IDs:A, D (auth: C)
Chain Length:998
Number of Molecules:2
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Sodium/potassium-transporting ATPase subunit beta-1
Gene (Uniprot):ATP1B1
Chain IDs:B, E (auth: D)
Chain Length:286
Number of Molecules:2
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Na+/K+ ATPase gamma subunit transcript variant a
Gene (Uniprot):FXYD2
Chain IDs:C (auth: G), F (auth: H)
Chain Length:27
Number of Molecules:2
Biological Source:Sus scrofa
Primary Citation
Crystal structure of the sodium-potassium pump.
Nature 450 1043 1049 (2007)
PMID: 18075585 DOI: 10.1038/nature06419

Abstact

The Na+,K+-ATPase generates electrochemical gradients for sodium and potassium that are vital to animal cells, exchanging three sodium ions for two potassium ions across the plasma membrane during each cycle of ATP hydrolysis. Here we present the X-ray crystal structure at 3.5 A resolution of the pig renal Na+,K+-ATPase with two rubidium ions bound (as potassium congeners) in an occluded state in the transmembrane part of the alpha-subunit. Several of the residues forming the cavity for rubidium/potassium occlusion in the Na+,K+-ATPase are homologous to those binding calcium in the Ca2+-ATPase of sarco(endo)plasmic reticulum. The beta- and gamma-subunits specific to the Na+,K+-ATPase are associated with transmembrane helices alphaM7/alphaM10 and alphaM9, respectively. The gamma-subunit corresponds to a fragment of the V-type ATPase c subunit. The carboxy terminus of the alpha-subunit is contained within a pocket between transmembrane helices and seems to be a novel regulatory element controlling sodium affinity, possibly influenced by the membrane potential.

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