3KCH image
Deposition Date 2009-10-21
Release Date 2010-03-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3KCH
Keywords:
Title:
Baranase crosslinked by glutaraldehyde
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.94 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 32
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribonuclease
Chain IDs:A, B, C
Chain Length:110
Number of Molecules:3
Biological Source:Bacillus amyloliquefaciens
Ligand Molecules
Primary Citation
Revisiting glutaraldehyde cross-linking: the case of the Arg-Lys intermolecular doublet
Acta Crystallogr.,Sect.F 66 225 228 (2010)
PMID: 20208148 DOI: 10.1107/S1744309109054037

Abstact

In addition to the common use of glutaraldehyde to nonspecifically cross-link protein crystals through lysine residues disposed on the surface of the protein, the use of gentle vapour diffusion of glutaraldehyde offers a convenient way to limit polymerization and to allow slow diffusion throughout the crystal. In the case of trimeric barnase crystals, a specific cross-link was observed between an lysine side chain and an arginine side chain that were spatially disposed at the ideal distance on the protein surface in the three monomers. Here, the direct observation of a specific Lys-Arg cross-link site is reported and a mechanism is proposed for the reaction.

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Primary Citation of related structures