ISDA

Deposition Date 2009-10-20

Release Date 2010-02-02

Last Version Date 2023-11-01

Entry Detail

PDB ID:

3KBZ

Keywords:

HYDROLASE

Title:

Crystal structure of human liver FBPase in complex with tricyclic inhibitor 6

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.45 Å

R-Value Free:

0.27

R-Value Work:

0.23

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Fructose-1,6-bisphosphatase 1
Gene (Uniprot):FBP1
Chain IDs:A, B, C, D
Chain Length:337
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P09467 Pfam ID:PF00316, PF18913 EC:3.1.3.11

Ligand Molecules

2T4

Primary Citation

Structure-based drug design of tricyclic 8H-indeno[1,2-d][1,3]thiazoles as potent FBPase inhibitors.

Tsukada, T, Takahashi, M, Takemoto, T, Kanno, O, Yamane, T, Kawamura, S, Nishi, T.Show

Bioorg.Med.Chem.Lett. 20 1004 1007 (2010)

PMID: 20045638 DOI: 10.1016/j.bmcl.2009.12.056

Abstact

With the goal of improving metabolic stability and further enhancing FBPase inhibitory activity, a series of tricyclic 8H-indeno[1,2-d][1,3]thiazoles was designed and synthesized with the aid of structure-based drug design. Extensive SAR studies led to the discovery of 19a with an IC(50) value of 1nM against human FBPase. X-ray crystallographic studies revealed that high affinity of 19a was due to the hydrophobic interaction arising from better shape complementarity and to the hydrogen bonding network involving the side chain on the tricyclic scaffold.

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Primary Citation of related structures