3K55 image
Deposition Date 2009-10-06
Release Date 2011-01-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3K55
Keywords:
Title:
Structure of beta hairpin deletion mutant of beta toxin from Staphylococcus aureus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-hemolysin
Mutagens:Delta 272-282
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Chain Length:306
Number of Molecules:16
Biological Source:Staphylococcus aureus
Primary Citation
Structure of a mutant beta toxin from Staphylococcus aureus reveals domain swapping and conformational flexibility
Acta Crystallogr.,Sect.F 67 438 441 (2011)
PMID: 21505235 DOI: 10.1107/S1744309111005239

Abstact

The 3.35 Å resolution crystal structure of a mutant form of the staphylococcal sphingomyelinase β toxin in which a conserved hydrophobic β-hairpin has been deleted is reported. It is shown that this mutation induces domain swapping of a C-terminal β-strand, leading to the formation of dimers linked by a conformationally flexible hinge region. Eight dimers are seen in the asymmetric unit, exhibiting a broad spectrum of conformations trapped in place by intermolecular contacts within the crystal lattice. Furthermore, the 16 monomers within each asymmetric unit exhibit a remarkable heterogeneity in thermal factors, which can be accounted for by the varying degrees to which each monomer interacts with other molecules in the crystal. This structure provides a unique example of the challenges associated with crystallographic study of flexible proteins.

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