3K51 image
Deposition Date 2009-10-06
Release Date 2010-10-13
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3K51
Keywords:
Title:
Crystal Structure of DcR3-TL1A complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 3 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor ligand superfamily member 15, secreted form
Gene (Uniprot):TNFSF15
Mutations:C95S,C135S
Chain IDs:A
Chain Length:184
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Decoy receptor 3
Gene (Uniprot):TNFRSF6B
Chain IDs:B
Chain Length:176
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Decoy Strategies: The Structure of TL1A:DcR3 Complex.
Structure 19 162 171 (2011)
PMID: 21300286 DOI: 10.1016/j.str.2010.12.004

Abstact

Decoy Receptor 3 (DcR3), a secreted member of the Tumor Necrosis Factor (TNF) receptor superfamily, neutralizes three different TNF ligands: FasL, LIGHT, and TL1A. Each of these ligands engages unique signaling receptors which direct distinct and critical immune responses. We report the crystal structures of the unliganded DcR3 ectodomain and its complex with TL1A, as well as complementary mutagenesis and biochemical studies. These analyses demonstrate that DcR3 interacts with invariant backbone and side-chain atoms in the membrane-proximal half of TL1A which supports recognition of its three distinct TNF ligands. Additional features serve as antideterminants that preclude interaction with other members of the TNF superfamily. This mode of interaction is unique among characterized TNF:TNFR family members and provides a mechanistic basis for the broadened specificity required to support the decoy function of DcR3, as well as for the rational manipulation of specificity and affinity of DcR3 and its ligands.

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