3JTY image
Deposition Date 2009-09-14
Release Date 2009-10-20
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3JTY
Title:
Crystal structure of a BenF-like porin from Pseudomonas fluorescens Pf-5
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.58 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BenF-like porin
Gene (Uniprot):PFL_1329
Chain IDs:A, B, C, D
Chain Length:402
Number of Molecules:4
Biological Source:Pseudomonas fluorescens Pf-5
Ligand Molecules
Primary Citation
Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.
Proteins 78 3056 3062 (2010)
PMID: 20737437 DOI: 10.1002/prot.22829

Abstact

The X-ray structure of a putative BenF-like (gene name: PFL1329) protein from Pseudomonas fluorescens Pf-5 (PflBenF) has been determined at 2.6Å resolution. X-ray crystallography revealed a canonical 18-stranded β-barrel fold that forms a central pore with a diameter of ∼4.6Å, which is consistent with the size and physicochemical properties of the presumed aromatic acid substrate, benzoate. Detailed comparisons with the previously-determined structure of Pseudomonas aeruginosa OpdK, a vanillate influx channel, revealed an arginine-rich aromatic acid selectivity filter of nearly identical structure composed of seven highly conserved residues Arg∼Asp∼Arg∼Arg∼Ser∼Asp∼Arg (R∼D∼R∼R∼S∼D∼R sequence motif, where ∼ denotes intervening residues) that define the narrowest part of the pore.

Legend

Protein

Chemical

Disease

Primary Citation of related structures