3JRV image
Deposition Date 2009-09-09
Release Date 2009-11-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3JRV
Title:
Structure of poxvirus K7 protein in complex with RNA helicase DDX3
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein K7
Gene (Uniprot):OPG044
Chain IDs:A, B
Chain Length:149
Number of Molecules:2
Biological Source:Vaccinia virus WR
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent RNA helicase DDX3X
Gene (Uniprot):DDX3X
Chain IDs:C, D, E
Chain Length:20
Number of Molecules:3
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Structural basis for targeting of human RNA helicase DDX3 by poxvirus protein K7
Structure 17 1528 1537 (2009)
PMID: 19913487 DOI: 10.1016/j.str.2009.09.005

Abstact

Poxviruses are DNA viruses that express numerous proteins to subvert the host immune response. Vaccinia virus protein K7 adopts a Bcl-2 fold and displays structural and functional similarities to Toll-like receptor antagonist A52. Both proteins interact with IRAK2 and TRAF6 and suppress TLR-dependent NF-kappaB activation. However, unlike A52, K7 also forms a complex with RNA helicase DDX3 and antagonizes interferon-beta promoter induction. We have narrowed the K7 binding site to an N-terminal peptide motif of DDX3 ahead of its core RNA-helicase domains. The crystal structure of full-length K7 in complex with the DDX3 peptide reveals a thumblike projection of tandem phenalyalanine residues of DDX3 into a deep hydrophobic cleft. Mutagenesis of these phenylalanines abolishes the effects of DDX3 on interferon-beta promoter induction. The structure of K7-DDX3 reveals a novel binding mode by a viral Bcl-2 protein that antagonizes a key pathway in innate immunity.

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Primary Citation of related structures