3JR3 image
Deposition Date 2009-09-08
Release Date 2009-09-29
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3JR3
Keywords:
Title:
Sir2 bound to acetylated peptide
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD-dependent deacetylase
Gene (Uniprot):cobB
Mutations:H116A
Chain IDs:A
Chain Length:246
Number of Molecules:1
Biological Source:Thermotoga maritima
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ALY B LYS N(6)-ACETYLLYSINE
Ligand Molecules
Primary Citation
Structure-based mechanism of ADP-ribosylation by sirtuins.
J.Biol.Chem. 284 33654 33661 (2009)
PMID: 19801667 DOI: 10.1074/jbc.M109.024521

Abstact

Sirtuins comprise a family of enzymes found in all organisms, where they play a role in diverse processes including transcriptional silencing, aging, regulation of transcription, and metabolism. The predominant reaction catalyzed by these enzymes is NAD(+)-dependent lysine deacetylation, although some sirtuins exhibit a weaker ADP-ribosyltransferase activity. Although the Sir2 deacetylation mechanism is well established, much less is known about the Sir2 ADP-ribosylation reaction. We have studied the ADP-ribosylation activity of a bacterial sirtuin, Sir2Tm, and show that acetylated peptides containing arginine or lysine 2 residues C-terminal to the acetyl lysine, the +2 position, are preferentially ADP-ribosylated at the +2 residue. A structure of Sir2Tm bound to the acetylated +2 arginine peptide shows how this arginine could enter the active site and react with a deacetylation reaction intermediate to yield an ADP-ribosylated peptide. The new biochemical and structural studies presented here provide mechanistic insights into the Sir2 ADP-ribosylation reaction and will aid in identifying substrates of this reaction.

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Primary Citation of related structures