ISDA

Deposition Date 2016-03-10

Release Date 2016-05-25

Last Version Date 2024-11-13

Entry Detail

PDB ID:

3JCU

Keywords:

MEMBRANE PROTEIN

Title:

Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution

Biological Source:

Source Organism:

Spinacia oleracea (Taxon ID: 3562)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:A, Z (auth: a)
Chain Length:344
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P69560 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:B, AA (auth: b)
Chain Length:508
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P04160 Pfam ID:PF00421

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:C, BA (auth: c)
Chain Length:473
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P06003 Pfam ID:PF00421

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:D, CA (auth: d)
Chain Length:353
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P06005 Pfam ID:PF00124

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E, DA (auth: e)
Chain Length:83
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P69383 Pfam ID:PF00283, PF00284

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F, EA (auth: f)
Chain Length:39
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P60128 Pfam ID:PF00283

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein, chloroplastic
Chain IDs:G, N, X (auth: Y), FA (auth: g), MA (auth: n), WA (auth: y)
Chain Length:267
Number of Molecules:6
Biological Source:Spinacia oleracea

UniProt ID:P12333 Pfam ID:PF00504

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:H, GA (auth: h)
Chain Length:73
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P05146 Pfam ID:PF00737

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:I, HA (auth: i)
Chain Length:36
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P62103 Pfam ID:PF02532

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:J, IA (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:Q9M3L2 Pfam ID:PF01788

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:K, JA (auth: k)
Chain Length:59
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P12163 Pfam ID:PF02533

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:L, KA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P60150 Pfam ID:PF02419

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:M, LA (auth: m)
Chain Length:34
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P62112 Pfam ID:PF05151

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 1, chloroplastic
Gene (Uniprot):PSBO
Chain IDs:O, NA (auth: o)
Chain Length:332
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P12359 Pfam ID:PF01716

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 2, chloroplastic
Gene (Uniprot):PSBP
Chain IDs:P, OA (auth: p)
Chain Length:267
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P12302 Pfam ID:PF01789

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Oxygen-evolving enhancer protein 3, chloroplastic
Gene (Uniprot):PSBQ
Chain IDs:Q, PA (auth: q)
Chain Length:232
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P12301 Pfam ID:PF05757

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chlorophyll A-B Binding protein 29 kD (CP29)
Chain IDs:R, QA (auth: r)
Chain Length:243
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:F2Z293 Pfam ID:PF00504

Polymer Type:polypeptide(L)
Molecule:Chlorophyll A-B Binding protein 26 kD (CP26)
Chain IDs:S, RA (auth: s)
Chain Length:295
Number of Molecules:2
Biological Source:Spinacia oleracea

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II Reaction Center protein Tc
Gene (Uniprot):psbT
Chain IDs:T, SA (auth: t)
Chain Length:33
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:P61840 Pfam ID:PF01405

Polymer Type:polypeptide(L)
Molecule:Photosystem II Reaction Center Tn protein
Chain IDs:U, TA (auth: u)
Chain Length:99
Number of Molecules:2
Biological Source:Spinacia oleracea

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center W protein, chloroplastic
Gene (Uniprot):psbW
Chain IDs:V (auth: W), UA (auth: w)
Chain Length:137
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:Q41387 Pfam ID:PF07123

Polymer Type:polypeptide(L)
Molecule:Photosystem II Reaction Center X protein
Chain IDs:W (auth: X), VA (auth: x)
Chain Length:117
Number of Molecules:2
Biological Source:Spinacia oleracea

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:Y (auth: Z), XA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Spinacia oleracea

UniProt ID:Q9M3M6 Pfam ID:PF01737

Ligand Molecules