3JC8 image
Deposition Date 2015-11-24
Release Date 2016-03-16
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3JC8
Keywords:
Title:
Architectural model of the type IVa pilus machine in a piliated state
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Aggregation State:
PARTICLE
Reconstruction Method:
TOMOGRAPHY
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PilA
Chain IDs:A (auth: Aa), B (auth: Ab), C (auth: Ac), D (auth: Ad), E (auth: Ae), F (auth: Af), G (auth: Ag), H (auth: Ah), I (auth: Ai), J (auth: Aj), K (auth: Ak), L (auth: Al), M (auth: Am), N (auth: An), O (auth: Ao), P (auth: Ap), Q (auth: Aq), R (auth: Ar), S (auth: As), T (auth: At), U (auth: Au), V (auth: Av), W (auth: Aw), X (auth: Ax), Y (auth: Ay), Z (auth: Az), AA (auth: A1), BA (auth: A2), CA (auth: A3), DA (auth: A4), EA (auth: A5), FA (auth: A6), GA (auth: A7), HA (auth: A8), IA (auth: A9)
Chain Length:158
Number of Molecules:35
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Type IV-A pilus assembly ATPase PilB
Gene (Uniprot):pilB
Chain IDs:JA (auth: Ba), KA (auth: Bb), LA (auth: Bc), MA (auth: Bd), NA (auth: Be), OA (auth: Bf)
Chain Length:566
Number of Molecules:6
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Type 4 fimbrial assembly protein PilC
Gene (Uniprot):pilC
Chain IDs:PA (auth: Ca), QA (auth: Cb)
Chain Length:417
Number of Molecules:2
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Type IV pilus biogenesis protein PilM
Gene (Uniprot):pilM
Chain IDs:TA (auth: Ma), WA (auth: Mb), ZA (auth: Mc), CB (auth: Md), FB (auth: Me), IB (auth: Mf), LB (auth: Mg), OB (auth: Mh), RB (auth: Mi), UB (auth: Mj), XB (auth: Mk), AC (auth: Ml)
Chain Length:395
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PilN
Gene (Uniprot):pilN
Chain IDs:RA (auth: Na), UA (auth: Nb), XA (auth: Nc), AB (auth: Nd), DB (auth: Ne), GB (auth: Nf), JB (auth: Ng), MB (auth: Nh), PB (auth: Ni), SB (auth: Nj), VB (auth: Nk), YB (auth: Nl)
Chain Length:225
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PilO
Gene (Uniprot):pilO
Chain IDs:SA (auth: Oa), VA (auth: Ob), YA (auth: Oc), BB (auth: Od), EB (auth: Oe), HB (auth: Of), KB (auth: Og), NB (auth: Oh), QB (auth: Oi), TB (auth: Oj), WB (auth: Ok), ZB (auth: Ol)
Chain Length:205
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PilP
Gene (Uniprot):pilP
Chain IDs:CC (auth: Pa), EC (auth: Pb), GC (auth: Pc), IC (auth: Pd), KC (auth: Pe), MC (auth: Pf), OC (auth: Pg), QC (auth: Ph), SC (auth: Pi), UC (auth: Pj), WC (auth: Pk), YC (auth: Pl)
Chain Length:172
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PilQ
Gene (Uniprot):pilQ
Chain IDs:BC (auth: Qa), DC (auth: Qb), FC (auth: Qc), HC (auth: Qd), JC (auth: Qe), LC (auth: Qf), NC (auth: Qg), PC (auth: Qh), RC (auth: Qi), TC (auth: Qj), VC (auth: Qk), XC (auth: Ql)
Chain Length:901
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LysM domain protein
Gene (Uniprot):MXAN_3001
Chain IDs:ZC (auth: Ta), AD (auth: Tb), BD (auth: Tc), CD (auth: Td), DD (auth: Te), ED (auth: Tf), FD (auth: Tg), GD (auth: Th), HD (auth: Ti), ID (auth: Tj), JD (auth: Tk), KD (auth: Tl)
Chain Length:411
Number of Molecules:12
Biological Source:Myxococcus xanthus DK 1622
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEA A PHE N-METHYLPHENYLALANINE
Ligand Molecules
Primary Citation
Architecture of the type IVa pilus machine.
Science 351 aad2001 aad2001 (2016)
PMID: 26965631 DOI: 10.1126/science.aad2001

Abstact

Type IVa pili are filamentous cell surface structures observed in many bacteria. They pull cells forward by extending, adhering to surfaces, and then retracting. We used cryo-electron tomography of intact Myxococcus xanthus cells to visualize type IVa pili and the protein machine that assembles and retracts them (the type IVa pilus machine, or T4PM) in situ, in both the piliated and nonpiliated states, at a resolution of 3 to 4 nanometers. We found that T4PM comprises an outer membrane pore, four interconnected ring structures in the periplasm and cytoplasm, a cytoplasmic disc and dome, and a periplasmic stem. By systematically imaging mutants lacking defined T4PM proteins or with individual proteins fused to tags, we mapped the locations of all 10 T4PM core components and the minor pilins, thereby providing insights into pilus assembly, structure, and function.

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