3JAV image
Deposition Date 2015-06-30
Release Date 2015-10-07
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3JAV
Title:
Structure of full-length IP3R1 channel in the apo-state determined by single particle cryo-EM
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Inositol 1,4,5-trisphosphate receptor type 1
Gene (Uniprot):Itpr1
Chain IDs:A, B, C, D
Chain Length:2750
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Gating machinery of InsP3R channels revealed by electron cryomicroscopy.
Nature 527 336 341 (2015)
PMID: 26458101 DOI: 10.1038/nature15249

Abstact

Inositol-1,4,5-trisphosphate receptors (InsP3Rs) are ubiquitous ion channels responsible for cytosolic Ca(2+) signalling and essential for a broad array of cellular processes ranging from contraction to secretion, and from proliferation to cell death. Despite decades of research on InsP3Rs, a mechanistic understanding of their structure-function relationship is lacking. Here we present the first, to our knowledge, near-atomic (4.7 Å) resolution electron cryomicroscopy structure of the tetrameric mammalian type 1 InsP3R channel in its apo-state. At this resolution, we are able to trace unambiguously ∼85% of the protein backbone, allowing us to identify the structural elements involved in gating and modulation of this 1.3-megadalton channel. Although the central Ca(2+)-conduction pathway is similar to other ion channels, including the closely related ryanodine receptor, the cytosolic carboxy termini are uniquely arranged in a left-handed α-helical bundle, directly interacting with the amino-terminal domains of adjacent subunits. This configuration suggests a molecular mechanism for allosteric regulation of channel gating by intracellular signals.

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Primary Citation of related structures