3JA6 image
Entry Detail
PDB ID:
3JA6
Title:
Cryo-electron Tomography and All-atom Molecular Dynamics Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2015-04-21
Release Date:
2015-12-09
Method Details:
Experimental Method:
Resolution:
12.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
TOMOGRAPHY
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Chemotaxis protein CheW
Chain IDs:A, B, D, F
Chain Length:139
Number of Molecules:4
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Chemotaxis protein CheA
Chain IDs:C, E
Chain Length:379
Number of Molecules:2
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Methyl-accepting chemotaxis protein 2
Chain IDs:G, I, K, M, O, Q
Chain Length:309
Number of Molecules:6
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Description:Methyl-accepting chemotaxis protein 2
Chain IDs:H, J, L, N, P, R
Chain Length:307
Number of Molecules:6
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling.
Elife 4 e08419 e08419 (2015)
PMID: 26583751 DOI: 10.7554/eLife.08419

Abstact

Chemotactic responses in bacteria require large, highly ordered arrays of sensory proteins to mediate the signal transduction that ultimately controls cell motility. A mechanistic understanding of the molecular events underlying signaling, however, has been hampered by the lack of a high-resolution structural description of the extended array. Here, we report a novel reconstitution of the array, involving the receptor signaling domain, histidine kinase CheA, and adaptor protein CheW, as well as a density map of the core-signaling unit at 11.3 Å resolution, obtained by cryo-electron tomography and sub-tomogram averaging. Extracting key structural constraints from our density map, we computationally construct and refine an atomic model of the core array structure, exposing novel interfaces between the component proteins. Using all-atom molecular dynamics simulations, we further reveal a distinctive conformational change in CheA. Mutagenesis and chemical cross-linking experiments confirm the importance of the conformational dynamics of CheA for chemotactic function.

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Primary Citation of related structures