3J9J image
Deposition Date 2015-02-02
Release Date 2015-09-02
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J9J
Title:
Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.28 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential cation channel subfamily V member 1
Gene (Uniprot):Trpv1
Chain IDs:A, B, C, D
Chain Length:586
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Nat.Methods 12 943 946 (2015)
PMID: 26280328 DOI: 10.1038/nmeth.3541

Abstact

Advances in high-resolution cryo-electron microscopy (cryo-EM) require the development of validation metrics to independently assess map quality and model geometry. We report EMRinger, a tool that assesses the precise fitting of an atomic model into the map during refinement and shows how radiation damage alters scattering from negatively charged amino acids. EMRinger (https://github.com/fraser-lab/EMRinger) will be useful for monitoring progress in resolving and modeling high-resolution features in cryo-EM.

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Protein

Chemical

Disease

Primary Citation of related structures
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