3J9F image
Entry Detail
PDB ID:
3J9F
Title:
Poliovirus complexed with soluble, deglycosylated poliovirus receptor (Pvr) at 4 degrees C
Biological Source:
PDB Version:
Deposition Date:
2015-01-15
Release Date:
2015-02-11
Method Details:
Experimental Method:
Resolution:
9.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Protein VP1
Chain IDs:A (auth: 1)
Chain Length:302
Number of Molecules:1
Biological Source:Human poliovirus 1 Mahoney
Polymer Type:polypeptide(L)
Description:Protein VP2
Chain IDs:B (auth: 2)
Chain Length:272
Number of Molecules:1
Biological Source:Human poliovirus 1 Mahoney
Polymer Type:polypeptide(L)
Description:Protein VP3
Chain IDs:C (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Human poliovirus 1 Mahoney
Polymer Type:polypeptide(L)
Description:Protein VP4
Chain IDs:D (auth: 4)
Chain Length:69
Number of Molecules:1
Biological Source:Human poliovirus 1 Mahoney
Polymer Type:polypeptide(L)
Description:Poliovirus receptor
Chain IDs:E (auth: 7)
Chain Length:116
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Poliovirus receptor
Chain IDs:F (auth: 8)
Chain Length:102
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Poliovirus receptor
Chain IDs:G (auth: 9)
Chain Length:92
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN F ASN GLYCOSYLATION SITE
Primary Citation
Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry.
J.Virol. 89 4143 4157 (2015)
PMID: 25631086 DOI: 10.1128/JVI.03101-14

Abstact

UNLABELLED Poliovirus infection is initiated by attachment to a receptor on the cell surface called Pvr or CD155. At physiological temperatures, the receptor catalyzes an irreversible expansion of the virus to form an expanded form of the capsid called the 135S particle. This expansion results in the externalization of the myristoylated capsid protein VP4 and the N-terminal extension of the capsid protein VP1, both of which become inserted into the cell membrane. Structures of the expanded forms of poliovirus and of several related viruses have recently been reported. However, until now, it has been unclear how receptor binding triggers viral expansion at physiological temperature. Here, we report poliovirus in complex with an enzymatically partially deglycosylated form of the 3-domain ectodomain of Pvr at a 4-Å resolution, as determined by cryo-electron microscopy. The interaction of the receptor with the virus in this structure is reminiscent of the interactions of Pvr with its natural ligands. At a low temperature, the receptor induces very few changes in the structure of the virus, with the largest changes occurring within the footprint of the receptor, and in a loop of the internal protein VP4. Changes in the vicinity of the receptor include the displacement of a natural lipid ligand (called "pocket factor"), demonstrating that the loss of this ligand, alone, is not sufficient to induce particle expansion. Finally, analogies with naturally occurring ligand binding in the nectin family suggest which specific structural rearrangements in the virus-receptor complex could help to trigger the irreversible expansion of the capsid. IMPORTANCE The cell-surface receptor (Pvr) catalyzes a large structural change in the virus that exposes membrane-binding protein chains. We fitted known atomic models of the virus and Pvr into three-dimensional experimental maps of the receptor-virus complex. The molecular interactions we see between poliovirus and its receptor are reminiscent of the nectin family, by involving the burying of otherwise-exposed hydrophobic groups. Importantly, poliovirus expansion is regulated by the binding of a lipid molecule within the viral capsid. We show that receptor binding either causes this molecule to be expelled or requires it, but that its loss is not sufficient to trigger irreversible expansion. Based on our model, we propose testable hypotheses to explain how the viral shell becomes destabilized, leading to RNA uncoating. These findings give us a better understanding of how poliovirus has evolved to exploit a natural process of its host to penetrate the membrane barrier.

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Primary Citation of related structures