3J82 image
Entry Detail
PDB ID:
3J82
Title:
Electron cryo-microscopy of DNGR-1 in complex with F-actin
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-09-25
Release Date:
2015-05-20
Method Details:
Experimental Method:
Resolution:
7.70 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-type lectin domain family 9 member A
Chain IDs:A
Chain Length:131
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Actin, cytoplasmic 1
Chain IDs:B, C, D
Chain Length:374
Number of Molecules:3
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC B HIS 4-METHYL-HISTIDINE
Primary Citation
Structure of the Complex of F-Actin and DNGR-1, a C-Type Lectin Receptor Involved in Dendritic Cell Cross-Presentation of Dead Cell-Associated Antigens.
Immunity 42 839 849 (2015)
PMID: 25979418 DOI: 10.1016/j.immuni.2015.04.009

Abstact

DNGR-1 is a C-type lectin receptor that binds F-actin exposed by dying cells and facilitates cross-presentation of dead cell-associated antigens by dendritic cells. Here we present the structure of DNGR-1 bound to F-actin at 7.7 Å resolution. Unusually for F-actin binding proteins, the DNGR-1 ligand binding domain contacts three actin subunits helically arranged in the actin filament, bridging over two protofilaments, as well as two neighboring actin subunits along one protofilament. Mutation of residues predicted to mediate ligand binding led to loss of DNGR-1-dependent cross-presentation of dead cell-associated antigens, formally demonstrating that the latter depends on F-actin recognition. Notably, DNGR-1 has relatively modest affinity for F-actin but multivalent interactions allow a marked increase in binding strength. Our findings shed light on modes of actin binding by cellular proteins and reveal how extracellular detection of cytoskeletal components by dedicated receptors allows immune monitoring of loss of cellular integrity.

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Primary Citation of related structures