3J5R image
Deposition Date 2013-10-28
Release Date 2013-12-04
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J5R
Title:
Reconstruction of TRPV1 ion channel in complex with capsaicin by single particle cryo-microscopy
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential cation channel subfamily V member 1
Gene (Uniprot):Trpv1
Chain IDs:A (auth: B), B (auth: A), C, D
Chain Length:598
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
TRPV1 structures in distinct conformations reveal activation mechanisms.
Nature 504 113 118 (2013)
PMID: 24305161 DOI: 10.1038/nature12823

Abstact

Transient receptor potential (TRP) channels are polymodal signal detectors that respond to a wide range of physical and chemical stimuli. Elucidating how these channels integrate and convert physiological signals into channel opening is essential to understanding how they regulate cell excitability under normal and pathophysiological conditions. Here we exploit pharmacological probes (a peptide toxin and small vanilloid agonists) to determine structures of two activated states of the capsaicin receptor, TRPV1. A domain (consisting of transmembrane segments 1-4) that moves during activation of voltage-gated channels remains stationary in TRPV1, highlighting differences in gating mechanisms for these structurally related channel superfamilies. TRPV1 opening is associated with major structural rearrangements in the outer pore, including the pore helix and selectivity filter, as well as pronounced dilation of a hydrophobic constriction at the lower gate, suggesting a dual gating mechanism. Allosteric coupling between upper and lower gates may account for rich physiological modulation exhibited by TRPV1 and other TRP channels.

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Chemical

Disease

Primary Citation of related structures
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