3J4J image
Deposition Date 2013-08-26
Release Date 2013-09-25
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J4J
Keywords:
Title:
Model of full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
11.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor IF-2
Gene (Uniprot):infB
Chain IDs:A
Chain Length:569
Number of Molecules:1
Biological Source:Thermus thermophilus
Ligand Molecules
Primary Citation
Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor.
Proc.Natl.Acad.Sci.USA 110 15656 15661 (2013)
PMID: 24029017 DOI: 10.1073/pnas.1309578110

Abstact

Translation initiation factor 2 (IF2) promotes 30S initiation complex (IC) formation and 50S subunit joining, which produces the 70S IC. The architecture of full-length IF2, determined by small angle X-ray diffraction and cryo electron microscopy, reveals a more extended conformation of IF2 in solution and on the ribosome than in the crystal. The N-terminal domain is only partially visible in the 30S IC, but in the 70S IC, it stabilizes interactions between IF2 and the L7/L12 stalk of the 50S, and on its deletion, proper N-formyl-methionyl(fMet)-tRNA(fMet) positioning and efficient transpeptidation are affected. Accordingly, fast kinetics and single-molecule fluorescence data indicate that the N terminus promotes 70S IC formation by stabilizing the productive sampling of the 50S subunit during 30S IC joining. Together, our data highlight the dynamics of IF2-dependent ribosomal subunit joining and the role played by the N terminus of IF2 in this process.

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Primary Citation of related structures