3J48 image
Deposition Date 2013-06-28
Release Date 2013-12-04
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J48
Keywords:
Title:
Cryo-EM structure of Poliovirus 135S particles
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP1
Chain IDs:A (auth: 1)
Chain Length:302
Number of Molecules:1
Biological Source:Human poliovirus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP2
Chain IDs:B (auth: 2)
Chain Length:272
Number of Molecules:1
Biological Source:Human poliovirus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein VP3
Chain IDs:C (auth: 3)
Chain Length:238
Number of Molecules:1
Biological Source:Human poliovirus 1
Ligand Molecules
Primary Citation
Cryo-Electron Microscopy Reconstruction Shows Poliovirus 135S Particles Poised for Membrane Interaction and RNA Release.
J.Virol. 88 1758 1770 (2014)
PMID: 24257617 DOI: 10.1128/JVI.01949-13

Abstact

During infection, binding of mature poliovirus to cell surface receptors induces an irreversible expansion of the capsid, to form an infectious cell-entry intermediate particle that sediments at 135S. In these expanded virions, the major capsid proteins (VP1 to VP3) adopt an altered icosahedral arrangement to open holes in the capsid at 2-fold and quasi-3-fold axes, and internal polypeptides VP4 and the N terminus of VP1, which can bind membranes, become externalized. Cryo-electron microscopy images for 117,330 particles were collected using Leginon and reconstructed using FREALIGN. Improved rigid-body positioning of major capsid proteins established reliably which polypeptide segments become disordered or rearranged. The virus-to-135S transition includes expansion of 4%, rearrangements of the GH loops of VP3 and VP1, and disordering of C-terminal extensions of VP1 and VP2. The N terminus of VP1 rearranges to become externalized near its quasi-3-fold exit, binds to rearranged GH loops of VP3 and VP1, and attaches to the top surface of VP2. These details improve our understanding of subsequent stages of infection, including endocytosis and RNA transfer into the cytoplasm.

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Primary Citation of related structures