3J42 image
Deposition Date 2013-06-13
Release Date 2013-07-17
Last Version Date 2024-11-27
Entry Detail
PDB ID:
3J42
Title:
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Dengue virus 2 (Taxon ID: 11060)
Method Details:
Experimental Method:
Resolution:
21.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope protein E
Chain IDs:A, B, C
Chain Length:390
Number of Molecules:3
Biological Source:Dengue virus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PrM
Chain IDs:D, E, F
Chain Length:81
Number of Molecules:3
Biological Source:Dengue virus 2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ig heavy chain V region MOPC 21, Igh protein chimera
Gene (Uniprot):Igh
Chain IDs:G, I, K
Chain Length:221
Number of Molecules:3
Biological Source:Mus musculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera
Chain IDs:H, J, L
Chain Length:212
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.
J.Virol. 87 8909 8915 (2013)
PMID: 23740974 DOI: 10.1128/JVI.00472-13

Abstact

The 2H2 monoclonal antibody recognizes the precursor peptide on immature dengue virus and might therefore be a useful tool for investigating the conformational change that occurs when the immature virus enters an acidic environment. During dengue virus maturation, spiky, immature, noninfectious virions change their structure to form smooth-surfaced particles in the slightly acidic environment of the trans-Golgi network, thereby allowing cellular furin to cleave the precursor-membrane proteins. The dengue virions become fully infectious when they release the cleaved precursor peptide upon reaching the neutral-pH environment of the extracellular space. Here we report on the cryo-electron microscopy structures of the immature virus complexed with the 2H2 antigen binding fragments (Fab) at different concentrations and under various pH conditions. At neutral pH and a high concentration of Fab molecules, three Fab molecules bind to three precursor-membrane proteins on each spike of the immature virus. However, at a low concentration of Fab molecules and pH 7.0, only two Fab molecules bind to each spike. Changing to a slightly acidic pH caused no detectable change of structure for the sample with a high Fab concentration but caused severe structural damage to the low-concentration sample. Therefore, the 2H2 Fab inhibits the maturation process of immature dengue virus when Fab molecules are present at a high concentration, because the three Fab molecules on each spike hold the precursor-membrane molecules together, thereby inhibiting the normal conformational change that occurs during maturation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures