3J23 image
Deposition Date 2012-08-13
Release Date 2013-04-03
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J23
Keywords:
Title:
The Enterovirus 71 empty capsid
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
9.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:capsid protein VP1
Chain IDs:A
Chain Length:225
Number of Molecules:1
Biological Source:Human enterovirus 71
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:capsid protein VP0
Chain IDs:B
Chain Length:237
Number of Molecules:1
Biological Source:Human enterovirus 71
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:capsid protein VP3
Chain IDs:C
Chain Length:239
Number of Molecules:1
Biological Source:Human enterovirus 71
Ligand Molecules
Primary Citation
The Enterovirus 71 A-particle Forms a Gateway to Allow Genome Release: A CryoEM Study of Picornavirus Uncoating.
Plos Pathog. 9 e1003240 e1003240 (2013)
PMID: 23555253 DOI: 10.1371/journal.ppat.1003240

Abstact

Since its discovery in 1969, enterovirus 71 (EV71) has emerged as a serious worldwide health threat. This human pathogen of the picornavirus family causes hand, foot, and mouth disease, and also has the capacity to invade the central nervous system to cause severe disease and death. Upon binding to a host receptor on the cell surface, the virus begins a two-step uncoating process, first forming an expanded, altered "A-particle", which is primed for genome release. In a second step after endocytosis, an unknown trigger leads to RNA expulsion, generating an intact, empty capsid. Cryo-electron microscopy reconstructions of these two capsid states provide insight into the mechanics of genome release. The EV71 A-particle capsid interacts with the genome near the icosahedral two-fold axis of symmetry, which opens to the external environment via a channel ∼10 Å in diameter that is lined with patches of negatively charged residues. After the EV71 genome has been released, the two-fold channel shrinks, though the overall capsid dimensions are conserved. These structural characteristics identify the two-fold channel as the site where a gateway forms and regulates the process of genome release.

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Primary Citation of related structures