3J15 image
Deposition Date 2011-12-12
Release Date 2012-02-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
3J15
Title:
Model of ribosome-bound archaeal Pelota and ABCE1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
6.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein pelota
Gene (Uniprot):pelA
Chain IDs:A
Chain Length:357
Number of Molecules:1
Biological Source:Thermococcus kodakarensis
Polymer Type:polypeptide(L)
Molecule:ABC transporter ATP-binding protein
Chain IDs:B
Chain Length:593
Number of Molecules:1
Biological Source:Pyrococcus furiosus
Primary Citation
Structural basis of highly conserved ribosome recycling in eukaryotes and archaea.
Nature 482 501 506 (2012)
PMID: 22358840 DOI: 10.1038/nature10829

Abstact

Ribosome-driven protein biosynthesis is comprised of four phases: initiation, elongation, termination and recycling. In bacteria, ribosome recycling requires ribosome recycling factor and elongation factor G, and several structures of bacterial recycling complexes have been determined. In the eukaryotic and archaeal kingdoms, however, recycling involves the ABC-type ATPase ABCE1 and little is known about its structural basis. Here we present cryo-electron microscopy reconstructions of eukaryotic and archaeal ribosome recycling complexes containing ABCE1 and the termination factor paralogue Pelota. These structures reveal the overall binding mode of ABCE1 to be similar to canonical translation factors. Moreover, the iron-sulphur cluster domain of ABCE1 interacts with and stabilizes Pelota in a conformation that reaches towards the peptidyl transferase centre, thus explaining how ABCE1 may stimulate peptide-release activity of canonical termination factors. Using the mechanochemical properties of ABCE1, a conserved mechanism in archaea and eukaryotes is suggested that couples translation termination to recycling, and eventually to re-initiation.

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