3J0E image
Deposition Date 2011-06-29
Release Date 2012-04-25
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3J0E
Keywords:
Title:
Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
9.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:ribosomal 23S RNA
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:ribosomal 23S RNA
Chain IDs:B
Chain Length:17
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:ribosomal 23S RNA
Chain IDs:C
Chain Length:13
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:ribosomal 23S RNA
Chain IDs:D
Chain Length:19
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:ribosomal 16S RNA
Chain IDs:E
Chain Length:18
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Gene (Uniprot):rpsL
Chain IDs:G (auth: F)
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Ribosome-recycling factor
Gene (Uniprot):frr
Chain IDs:H (auth: G)
Chain Length:185
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Molecule:Elongation factor G
Gene (Uniprot):fusA
Chain IDs:I (auth: H)
Chain Length:702
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:ribosomal 16S RNA
Chain IDs:F (auth: e)
Chain Length:18
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
Structural insights into initial and intermediate steps of the ribosome-recycling process.
Embo J. 31 1836 1846 (2012)
PMID: 22388519 DOI: 10.1038/emboj.2012.22

Abstact

The ribosome-recycling factor (RRF) and elongation factor-G (EF-G) disassemble the 70S post-termination complex (PoTC) into mRNA, tRNA, and two ribosomal subunits. We have determined cryo-electron microscopic structures of the PoTC·RRF complex, with and without EF-G. We find that domain II of RRF initially interacts with universally conserved residues of the 23S rRNA helices 43 and 95, and protein L11 within the 50S ribosomal subunit. Upon EF-G binding, both RRF and tRNA are driven towards the tRNA-exit (E) site, with a large rotational movement of domain II of RRF towards the 30S ribosomal subunit. During this intermediate step of the recycling process, domain II of RRF and domain IV of EF-G adopt hitherto unknown conformations. Furthermore, binding of EF-G to the PoTC·RRF complex reverts the ribosome from ratcheted to unratcheted state. These results suggest that (i) the ribosomal intersubunit reorganizations upon RRF binding and subsequent EF-G binding could be instrumental in destabilizing the PoTC and (ii) the modes of action of EF-G during tRNA translocation and ribosome-recycling steps are markedly different.

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Primary Citation of related structures