3J0A image
Entry Detail
PDB ID:
3J0A
Keywords:
Title:
Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2011-06-02
Release Date:
2011-12-28
Method Details:
Experimental Method:
Resolution:
26.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Toll-like receptor 5
Chain IDs:A, B
Chain Length:844
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Toll-like receptor 5 forms asymmetric dimers in the absence of flagellin.
J.Struct.Biol. 177 402 409 (2012)
PMID: 22173220 DOI: 10.1016/j.jsb.2011.12.002

Abstact

The structure of full-length human TLR5 determined by electron microscopy single-particle image reconstruction at 26Å resolution shows that TLR5 forms an asymmetric homodimer via ectodomain interactions. The structure shows that like TLR9, TLR5 dimerizes in the absence of ligand. The asymmetry of the dimer suggests that TLR5 may recognize two flagellin molecules cooperatively to establish an optimal flagellin response threshold. A TLR5 homology model was generated and fitted into the electron microscopy structure. All seven predicted N-linked glycosylation sites are exposed on the molecular surface, away from the dimer interface. Glycosylation at the first five sites was confirmed by tandem mass spectrometry. Two aspartate residues proposed to interact with flagellin (Asp294 and Asp366) are sterically occluded by a glycan at position 342. In contrast, the central region of the ectodomains near the dimer interface is unobstructed by glycans. Ligand binding in this region would be consistent with the ligand binding sites of other TLRs.

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Primary Citation of related structures