3IZZ image
Deposition Date 2011-01-20
Release Date 2011-03-30
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3IZZ
Title:
Models for ribosome components that are nearest neighbors to the bovine mitochondrial initiation factor2 bound to the E. Coli ribosome
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Resolution:
10.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:Helix 5, 14, 15 (Small Subunit)
Chain IDs:A
Chain Length:59
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:Helix 69, 71, 89, 92, 95 (Large Subunit)
Chain IDs:E (auth: B)
Chain Length:118
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:Helix 18 (Small Subunit)
Chain IDs:B (auth: D)
Chain Length:60
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:Helix 44 (Small Subunit)
Chain IDs:C (auth: E)
Chain Length:100
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Protein S12 (Small Subunit)
Chain IDs:D (auth: F)
Chain Length:124
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:Protein L14 (Large Subunit)
Chain IDs:F (auth: G)
Chain Length:121
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Insertion domain within mammalian mitochondrial translation initiation factor 2 serves the role of eubacterial initiation factor 1.
Proc.Natl.Acad.Sci.USA 108 3918 3923 (2011)
PMID: 21368145 DOI: 10.1073/pnas.1017425108

Abstact

Mitochondria have their own translational machineries for the synthesis of thirteen polypeptide chains that are components of the complexes that participate in the process of oxidative phosphorylation (or ATP generation). Translation initiation in mammalian mitochondria requires two initiation factors, IF2(mt) and IF3(mt), instead of the three that are present in eubacteria. The mammalian IF2(mt) possesses a unique 37 amino acid insertion domain, which is known to be important for the formation of the translation initiation complex. We have obtained a three-dimensional cryoelectron microscopic map of the mammalian IF2(mt) in complex with initiator fMet-tRNA(iMet) and the eubacterial ribosome. We find that the 37 amino acid insertion domain interacts with the same binding site on the ribosome that would be occupied by the eubacterial initiation factor IF1, which is absent in mitochondria. Our finding suggests that the insertion domain of IF2(mt) mimics the function of eubacterial IF1, by blocking the ribosomal aminoacyl-tRNA binding site (A site) at the initiation step.

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Primary Citation of related structures