3IZ3 image
Deposition Date 2010-09-14
Release Date 2011-03-16
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3IZ3
Keywords:
Title:
CryoEM structure of cytoplasmic polyhedrosis virus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Structural protein VP3
Chain IDs:A
Chain Length:1058
Number of Molecules:1
Biological Source:Bombyx mori cypovirus 1
Polymer Type:polypeptide(L)
Molecule:Structural protein VP1
Chain IDs:B, C
Chain Length:1333
Number of Molecules:2
Biological Source:Bombyx mori cypovirus 1
Polymer Type:polypeptide(L)
Molecule:Viral structural protein 5
Gene (Uniprot):VP5
Chain IDs:D, E
Chain Length:291
Number of Molecules:2
Biological Source:Bombyx mori cypovirus 1
Primary Citation
Atomic model of a cypovirus built from cryo-EM structure provides insight into the mechanism of mRNA capping.
Proc.Natl.Acad.Sci.USA 108 1373 1378 (2011)
PMID: 21220303 DOI: 10.1073/pnas.1014995108

Abstact

The cytoplasmic polyhedrosis virus (CPV) from the family Reoviridae belongs to a subgroup of "turreted" reoviruses, in which the mRNA capping activity occurs in a pentameric turret. We report a full atomic model of CPV built from a 3D density map obtained using cryoelectron microscopy. The image data for the 3D reconstruction were acquired exclusively from a CCD camera. Our structure shows that the enzymatic domains of the pentameric turret of CPV are topologically conserved and that there are five unique channels connecting the guanylyltransferase and methyltransferase regions. This structural organization reveals how the channels guide nascent mRNA sequentially to guanylyltransferase, 7-N-methyltransferase, and 2'-O-methyltransferase in the turret, undergoing the highly coordinated mRNA capping activity. Furthermore, by fitting the deduced amino acid sequence of the protein VP5 to 120 large protrusion proteins on the CPV capsid shell, we confirmed that this protrusion protein is encoded by CPV RNA segment 7.

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