3IYY image
Deposition Date 2010-07-23
Release Date 2010-09-01
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3IYY
Title:
Coordinates of the b1b bridge-forming protein structures fitted into the Cryo-EM map of EFG.GDPNP-bound E.coli 70S ribosome(EMD-1363)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
10.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L31
Chain IDs:A
Chain Length:70
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L5
Chain IDs:B (auth: F)
Chain Length:179
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Chain IDs:C (auth: M)
Chain Length:118
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Intrinsic molecular properties of the protein-protein bridge facilitate ratchet-like motion of the ribosome.
Biochem.Biophys.Res.Commun. 399 192 197 (2010)
PMID: 20643101 DOI: 10.1016/j.bbrc.2010.07.053

Abstact

The ribosomal intersubunit bridges maintain the overall architecture of the ribosome and thereby play a pivotal role in the dynamics of translation. The only protein-protein bridge, b1b, is formed by the two proteins, S13 and L5 of the small and large ribosomal subunits, respectively. B1b absorbs the largest movement during ratchet-like motion, and its two proteins reorganize in different constellations during this motion of the ribosome. Our results in this study of b1b in the Escherichia coli 70S ribosome suggest that the intrinsic molecular features of the bridging proteins allow the bridge to modulate the ratchet-like motion in a controlled manner. Additionally, another large subunit protein, L31, seems to participate with S13 and L5 in the formation, dynamics, and stabilization of this bridge.

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Primary Citation of related structures