3IYL image
Deposition Date 2010-02-02
Release Date 2010-05-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
3IYL
Keywords:
Title:
Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer capsid VP4
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Chain Length:648
Number of Molecules:20
Biological Source:Grass carp reovirus
Polymer Type:polypeptide(L)
Molecule:Core protein VP6
Chain IDs:U, V
Chain Length:412
Number of Molecules:2
Biological Source:Grass carp reovirus
Polymer Type:polypeptide(L)
Molecule:VP1
Chain IDs:W
Chain Length:1299
Number of Molecules:1
Biological Source:Grass carp reovirus
Polymer Type:polypeptide(L)
Molecule:VP3
Chain IDs:X, Y
Chain Length:1214
Number of Molecules:2
Biological Source:Grass carp reovirus
Ligand Molecules
Primary Citation
3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry.
Cell(Cambridge,Mass.) 141 472 482 (2010)
PMID: 20398923 DOI: 10.1016/j.cell.2010.03.041

Abstact

To achieve cell entry, many nonenveloped viruses must transform from a dormant to a primed state. In contrast to the membrane fusion mechanism of enveloped viruses (e.g., influenza virus), this membrane penetration mechanism is poorly understood. Here, using single-particle cryo-electron microscopy, we report a 3.3 A structure of the primed, infectious subvirion particle of aquareovirus. The density map reveals side-chain densities of all types of amino acids (except glycine), enabling construction of a full-atom model of the viral particle. Our structure and biochemical results show that priming involves autocleavage of the membrane penetration protein and suggest that Lys84 and Glu76 may facilitate this autocleavage in a nucleophilic attack. We observe a myristoyl group, covalently linked to the N terminus of the penetration protein and embedded in a hydrophobic pocket. These results suggest a well-orchestrated process of nonenveloped virus entry involving autocleavage of the penetration protein prior to exposure of its membrane-insertion finger.

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Primary Citation of related structures