3IXW image
Deposition Date 2009-02-13
Release Date 2009-06-02
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3IXW
Keywords:
Title:
Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
8.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemocyanin AA6 chain
Chain IDs:A, B (auth: C), C (auth: D), D (auth: E), E (auth: F), F (auth: G), G (auth: H), H (auth: I), I (auth: J), J (auth: K), K (auth: L), L (auth: M)
Chain Length:626
Number of Molecules:12
Biological Source:Androctonus australis
Ligand Molecules
Primary Citation
Structural Mechanism of SDS-Induced Enzyme Activity of Scorpion Hemocyanin Revealed by Electron Cryomicroscopy.
Structure 17 749 758 (2009)
PMID: 19446530 DOI: 10.1016/j.str.2009.03.005

Abstact

Phenoloxidases (POs) occur in all organisms and are involved in skin and hair coloring in mammals, and initiating melanization in wound healing. Mutation or overexpression of PO can cause albinism or melanoma, respectively. SDS can convert inactive PO and the oxygen carrier hemocyanin (Hc) into enzymatically active PO. Here we present single-particle cryo-EM maps at subnanometer resolution and pseudoatomic models of the 24-oligomeric Hc from scorpion Pandinus imperator in resting and SDS-activated states. Our structural analyses led to a plausible mechanism of Hc enzyme PO activation: upon SDS activation, the intrinsically flexible Hc domain I twists away from domains II and III in each subunit, exposing the entrance to the active site; this movement is stabilized by enhanced interhexamer and interdodecamer interactions, particularly in the central linker subunits. This mechanism could be applicable to other type 3 copper proteins, as the active site is highly conserved.

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Primary Citation of related structures