3IWD image
Deposition Date 2009-09-02
Release Date 2010-02-09
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3IWD
Keywords:
Title:
T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:S-adenosylmethionine decarboxylase
Gene (Uniprot):speH
Chain IDs:B (auth: A), D (auth: C)
Chain Length:68
Number of Molecules:2
Biological Source:Thermotoga maritima
Polymer Type:polypeptide(L)
Molecule:S-adenosylmethionine decarboxylase
Gene (Uniprot):speH
Chain IDs:A (auth: B), C (auth: D)
Chain Length:62
Number of Molecules:2
Biological Source:Thermotoga maritima
Ligand Molecules
Primary Citation
Complexes of Thermotoga maritimaS-adenosylmethionine decarboxylase provide insights into substrate specificity.
Acta Crystallogr.,Sect.D 66 181 189 (2010)
PMID: 20124698 DOI: 10.1107/S090744490904877X

Abstact

The polyamines putrescine, spermidine and spermine are ubiquitous aliphatic cations and are essential for cellular growth and differentiation. S-Adenosylmethionine decarboxylase (AdoMetDC) is a critical pyruvoyl-dependent enzyme in the polyamine-biosynthetic pathway. The crystal structures of AdoMetDC from humans and plants and of the AdoMetDC proenzyme from Thermotoga maritima have been obtained previously. Here, the crystal structures of activated T. maritima AdoMetDC (TmAdoMetDC) and of its complexes with S-adenosylmethionine methyl ester and 5'-deoxy-5'-dimethylthioadenosine are reported. The results demonstrate for the first time that TmAdoMetDC autoprocesses without the need for additional factors and that the enzyme contains two complete active sites, both of which use residues from both chains of the homodimer. The complexes provide insights into the substrate specificity and ligand binding of AdoMetDC in prokaryotes. The conservation of the ligand-binding mode and the active-site residues between human and T. maritima AdoMetDC provides insight into the evolution of AdoMetDC.

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Primary Citation of related structures