3IU3 image
Deposition Date 2009-08-29
Release Date 2010-01-26
Last Version Date 2024-10-16
Entry Detail
PDB ID:
3IU3
Keywords:
Title:
Crystal structure of the Fab fragment of therapeutic antibody Basiliximab in complex with IL-2Ra (CD25) ectodomain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of Fab fragment of Basiliximab
Chain IDs:A, C, E (auth: H)
Chain Length:215
Number of Molecules:3
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of Fab fragment of Basiliximab
Chain IDs:B, D, F (auth: L)
Chain Length:210
Number of Molecules:3
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Interleukin-2 receptor alpha chain
Gene (Uniprot):IL2RA
Chain IDs:G (auth: I), H (auth: J), I (auth: K)
Chain Length:223
Number of Molecules:3
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN G ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural basis for the blockage of IL-2 signaling by therapeutic antibody basiliximab
J.Immunol. 184 1361 1368 (2010)
PMID: 20032294 DOI: 10.4049/jimmunol.0903178

Abstact

IL-2 signaling plays a central role in the initiation and activation of immune responses. Correspondingly, blockage of this pathway leads to inhibition of the immune system and would provide some therapeutic benefits. Basiliximab (Simulect), a therapeutic mAb drug with specificity against IL-2R alpha of T cells, was approved by U.S. Food and Drug Administration in 1998. It has been proven to be effective in the suppression of the IL-2 pathway and hence has been widely used to prevent allograft rejection in organ transplantation, especially in kidney transplants. In this study, we report the crystal structure of the basiliximab Fab in complex with the ectodomain of IL-2R alpha at 2.9 A resolution. In the complex structure, the Fab interacts with IL-2R alpha with extensive hydrophobic and hydrophilic interactions, accounting for a high binding affinity of 0.14 nM. The Ag binding site of basiliximab consists of all six CDR loops that form a large binding interface with a central shallow hydrophobic groove surrounded by four hydrophilic patches. The discontinuous epitope is composed of several segments from the D1 domain and a minor segment from the D2 domain that overlap with most of the regions responsible for the interactions with IL-2. Thus, basiliximab binding can completely block the interactions of IL-2 with IL-2R alpha and hence inhibit the activation of the IL-2 signal pathway. The structural results also provide important implications for the development of improved and new IL-2R alpha-targeted mAb drugs.

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Primary Citation of related structures