3IT8 image
Deposition Date 2009-08-27
Release Date 2009-10-20
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3IT8
Keywords:
Title:
Crystal structure of TNF alpha complexed with a poxvirus MHC-related TNF binding protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor
Gene (Uniprot):TNF
Chain IDs:A, B, C, G, H, I
Chain Length:161
Number of Molecules:6
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:2L protein
Gene (Uniprot):2L
Chain IDs:D, E, F, J, K, L
Chain Length:324
Number of Molecules:6
Biological Source:Yaba-like disease virus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN D ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Crystal structure of TNFalpha complexed with a poxvirus MHC-related TNF binding protein
Nat.Struct.Mol.Biol. 16 1189 1191 (2009)
PMID: 19838188 DOI: 10.1038/nsmb.1683

Abstact

The poxvirus 2L protein binds tumor necrosis factor-alpha (TNFalpha) to inhibit host antiviral and immune responses. The 2.8-A 2L-TNFalpha structure reveals three symmetrically arranged 2L molecules per TNFalpha trimer. 2L resembles class I major histocompatibility complex (MHC) molecules but lacks a peptide-binding groove and beta2-microglobulin light chain. Overlap between the 2L and host TNF receptor-binding sites on TNFalpha rationalizes 2L inhibition of TNFalpha-TNF receptor interactions and prevention of TNFalpha-induced immune responses.

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Protein

Chemical

Disease

Primary Citation of related structures
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