3IR8 image
Deposition Date 2009-08-21
Release Date 2009-09-08
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3IR8
Title:
Red fluorescent protein mKeima at pH 7.0
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large stokes shift fluorescent protein
Gene (Uniprot):m-keima
Chain IDs:A, B
Chain Length:223
Number of Molecules:2
Biological Source:Montipora sp. 20
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CRQ A GLN ?
Primary Citation
Excited state proton transfer in the red fluorescent protein mKeima.
J.Am.Chem.Soc. 131 13212 13213 (2009)
PMID: 19708654 DOI: 10.1021/ja904665x

Abstact

mKeima is an unusual monomeric red fluorescent protein (lambda(em)(max) approximately 620 nm) that is maximally excited in the blue (lambda(ex)(max) approximately 440 nm). The large Stokes shift suggests that the chromophore is normally protonated. A 1.63 A resolution structure of mKeima reveals the chromophore to be imbedded in a novel hydrogen bond network, different than in GFP, which could support proton transfer from the chromophore hydroxyl, via Ser142, to Asp157. At low temperatures the emission contains a green component (lambda(em)(max) approximately 535 nm), enhanced by deuterium substitution, presumably resulting from reduced proton transfer efficiency. Ultrafast pump/probe studies reveal a rising component in the 610 nm emission with a lifetime of approximately 4 ps, characterizing the rate of proton transfer. Mutation of Asp157 to neutral Asn changes the chromophore resting charge state to anionic (lambda(ex)(max) approximately 565 nm, lambda(em)(max) approximately 620 nm). Thus, excited state proton transfer (ESPT) explains the large Stokes shift. This work unambiguously characterizes green emission from the protonated acylimine chromophore of red fluorescent proteins.

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Primary Citation of related structures