ISDA: 3IPY

Deposition Date 2009-08-18

Release Date 2010-08-18

Last Version Date 2023-09-06

Entry Detail

PDB ID:

3IPY

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

X-Ray structure of Human Deoxycytidine Kinase in complex with an inhibitor

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.54 Å

R-Value Free:

0.27

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

I 21 21 21

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Deoxycytidine kinase
Gene (Uniprot):DCK
Chain IDs:A, B
Chain Length:241
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P27707 Pfam ID:PF01712 EC:2.7.1.74

Ligand Molecules

B87

MLT

Primary Citation

Lead optimization and structure-based design of potent and bioavailable deoxycytidine kinase inhibitors.

Jessop, T.C, Tarver, J.E, Carlsen, M, Xu, A, Healy, J.P, Heim-Riether, A, Fu, Q, Taylor, J.A, Augeri, D.J, Shen, M, Stouch, T.R, Swanson, R.V, Tari, L.W, Hunter, M, Hoffman, I, Keyes, P.E, Yu, X.C, Miranda, M, Liu, Q, Swaffield, J.C, David Kimball, S, Nouraldeen, A, Wilson, A.G, Foushee, A.M, Jhaver, K, Finch, R, Anderson, S, Oravecz, T, Carson, K.G.Show

Bioorg.Med.Chem.Lett. 19 6784 6787 (2009)

PMID: 19836232 DOI: 10.1016/j.bmcl.2009.09.081

Abstact

A series of deoxycytidine kinase inhibitors was simultaneously optimized for potency and PK properties. A co-crystal structure then allowed merging this series with a high throughput screening hit to afford a highly potent, selective and orally bioavailable inhibitor, compound 10. This compound showed dose dependent inhibition of deoxycytidine kinase in vivo.

Legend

Protein

Chemical

Disease

Primary Citation of related structures

Abstact

Feedback Form