3IPV image
Entry Detail
PDB ID:
3IPV
Title:
Crystal structure of Spatholobus parviflorus seed lectin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2009-08-18
Release Date:
2009-09-08
Method Details:
Experimental Method:
Resolution:
2.04 Å
R-Value Free:
0.26
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lectin alpha chain
Chain IDs:A, C
Chain Length:251
Number of Molecules:2
Biological Source:Spatholobus parviflorus
Polymer Type:polypeptide(L)
Description:Lectin beta chain
Chain IDs:B, D
Chain Length:239
Number of Molecules:2
Biological Source:Spatholobus parviflorus
Primary Citation
X-ray structure of a galactose-specific lectin from Spatholobous parviflorous
Int.J.Biol.Macromol. 49 992 998 (2011)
PMID: 21889532 DOI: 10.1016/j.ijbiomac.2011.08.021

Abstact

A galactose-specific seed lectin from Spatholobous parviflorus (SPL) has been purified, crystallized and its X-ray structure solved. It is the first lectin purified and crystallized from the genus Spatholobus (family: Fabaceae). The crystals belong to the space group P1, with a=60.792 Å, b=60.998 Å, c=78.179 Å, α=78.68°, β=88.62°, γ=104.32°. The data were collected at 2.04 Å resolution under cryocondition, on a MAR image-plate detector system, mounted on a rotating anode X-ray generator. The coordinates of Dolichos biflorus lectin (1lu1) were successfully used for the structure solution by molecular replacement method. The primary structure of the SPL was not known earlier and it was unambiguously visible in the electron density. S. parviflorus lectin is a hetero-dimeric-tetramer with two alpha and two beta chains of 251 and 239 residues respectively. SPL has two metal ions, Ca(2+) and Mn(2+), bound to a loop region of each chain. The SPL monomers are in jelly roll form.

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