3IPD image
Deposition Date 2009-08-17
Release Date 2009-09-01
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3IPD
Keywords:
Title:
Helical extension of the neuronal SNARE complex into the membrane, spacegroup I 21 21 21
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.80 Å
R-Value Free:
0.33
R-Value Work:
0.30
R-Value Observed:
0.30
Space Group:
I 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vesicle-associated membrane protein 2
Gene (Uniprot):Vamp2
Chain IDs:A, E
Chain Length:91
Number of Molecules:2
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Syntaxin-1A
Gene (Uniprot):Stx1a
Chain IDs:B, F
Chain Length:109
Number of Molecules:2
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Synaptosomal-associated protein 25
Gene (Uniprot):Snap25
Chain IDs:C, G
Chain Length:80
Number of Molecules:2
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Synaptosomal-associated protein 25
Gene (Uniprot):Snap25
Chain IDs:D, H
Chain Length:68
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Helical extension of the neuronal SNARE complex into the membrane
Nature 460 525 528 (2009)
PMID: 19571812 DOI: 10.1038/nature08156

Abstact

Neurotransmission relies on synaptic vesicles fusing with the membrane of nerve cells to release their neurotransmitter content into the synaptic cleft, a process requiring the assembly of several members of the SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) family. SNAREs represent an evolutionarily conserved protein family that mediates membrane fusion in the secretory and endocytic pathways of eukaryotic cells. On membrane contact, these proteins assemble in trans between the membranes as a bundle of four alpha-helices, with the energy released during assembly being thought to drive fusion. However, it is unclear how the energy is transferred to the membranes and whether assembly is conformationally linked to fusion. Here, we report the X-ray structure of the neuronal SNARE complex, consisting of rat syntaxin 1A, SNAP-25 and synaptobrevin 2, with the carboxy-terminal linkers and transmembrane regions at 3.4 A resolution. The structure shows that assembly proceeds beyond the already known core SNARE complex, resulting in a continuous helical bundle that is further stabilized by side-chain interactions in the linker region. Our results suggest that the final phase of SNARE assembly is directly coupled to membrane merger.

Legend

Protein

Chemical

Disease

Primary Citation of related structures