3INR image
Deposition Date 2009-08-12
Release Date 2009-09-22
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3INR
Keywords:
Title:
Structure of UDP-galactopyranose mutase bound to UDP-galactose (oxidized)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:UDP-galactopyranose mutase
Gene (Uniprot):rfbD
Chain IDs:A, B
Chain Length:390
Number of Molecules:2
Biological Source:Klebsiella pneumoniae
Primary Citation
X-ray crystallography reveals a reduced substrate complex of UDP-galactopyranose mutase poised for covalent catalysis by flavin .
Biochemistry 48 9171 9173 (2009)
PMID: 19719175 DOI: 10.1021/bi901437v

Abstact

The flavoenzyme uridine 5'-diphosphate galactopyranose mutase (UGM or Glf) catalyzes the interconversion of UDP-galactopyranose and UDP-galactofuranose. The latter is a key building block for cell wall construction in numerous pathogens, including Mycobacterium tuberculosis. Mechanistic studies of UGM suggested a novel role for the flavin, and we previously provided evidence that the catalytic mechanism proceeds through a covalent flavin-galactose iminium. Here, we describe 2.3 and 2.5 A resolution X-ray crystal structures of the substrate-bound enzyme in oxidized and reduced forms, respectively. In the latter, C1 of the substrate is 3.6 A from the nucleophilic flavin N5 position. This orientation is consistent with covalent catalysis by flavin.

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Primary Citation of related structures