3IKY image
Deposition Date 2009-08-06
Release Date 2009-09-29
Last Version Date 2024-02-21
Entry Detail
PDB ID:
3IKY
Title:
Structural model of ParM filament in the open state by cryo-EM
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
18.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Plasmid segregation protein parM
Gene (Uniprot):parM
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:320
Number of Molecules:12
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural polymorphism of the ParM filament and dynamic instability
Structure 17 1253 1264 (2009)
PMID: 19748346 DOI: 10.1016/j.str.2009.07.008

Abstact

Segregation of the R1 plasmid in bacteria relies on ParM, an actin homolog that segregates plasmids by switching between cycles of polymerization and depolymerization. We find similar polymerization kinetics and stability in the presence of either ATP or GTP and a 10-fold affinity preference for ATP over GTP. We used electron cryo-microscopy to evaluate the heterogeneity within ParM filaments. In addition to variable twist, ParM has variable axial rise, and both parameters are coupled. Subunits in the same ParM filaments can exist in two different structural states, with the nucleotide-binding cleft closed or open, and the bound nucleotide biases the distribution of states. The interface between protomers is different between these states, and in neither state is it similar to F-actin. Our results suggest that the closed state of the cleft is required but not sufficient for ParM polymerization, and provide a structural basis for the dynamic instability of ParM filaments.

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