3IDV image
Deposition Date 2009-07-21
Release Date 2010-07-07
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3IDV
Keywords:
Title:
Crystal structure of the a0a fragment of ERp72
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein disulfide-isomerase A4
Gene (Uniprot):PDIA4
Chain IDs:A
Chain Length:241
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure of the Catalytic a(0)a Fragment of the Protein Disulfide Isomerase ERp72.
J.Mol.Biol. 401 618 625 (2010)
PMID: 20600112 DOI: 10.1016/j.jmb.2010.06.045

Abstact

Protein disulfide isomerases (PDIs) are responsible for catalyzing the proper oxidation and isomerization of disulfide bonds of newly synthesized proteins in the endoplasmic reticulum (ER). The ER contains many different PDI-like proteins. Some, such as PDI, are general enzymes that directly recognize misfolded proteins while others, such as ERp57 and ERp72, have more specialized roles. Here, we report the high-resolution X-ray crystal structure of the N-terminal portion of ERp72 (also known as CaBP2 or PDI A4), which contains two a(0)a catalytic thioredoxin-like domains. The structure shows that the a(0) domain contains an additional N-terminal beta-strand and a different conformation of the beta5-alpha4 loop relative to other thioredoxin-like domains. The structure of the a domain reveals that a conserved arginine residue inserts into the hydrophobic core and makes a salt bridge with a conserved glutamate residue in the vicinity of the catalytic site. A structural model of full-length ERp72 shows that all three catalytic sites roughly face each other and positions the adjacent hydrophobic patches that are likely involved in protein substrate binding.

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