3IAQ image
Deposition Date 2009-07-14
Release Date 2009-12-29
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3IAQ
Keywords:
Title:
E. coli (lacz) beta-galactosidase (E416V)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-galactosidase
Mutations:E416V
Chain IDs:A, B, C, D
Chain Length:1023
Number of Molecules:4
Biological Source:Escherichia coli K-12
Primary Citation
Studies of Glu-416 variants of beta-galactosidase (E. coli) show that the active site Mg(2+) is not important for structure and indicate that the main role of Mg (2+) is to mediate optimization of active site chemistry
Protein J. 29 26 31 (2010)
PMID: 19936901 DOI: 10.1007/s10930-009-9216-x

Abstact

Variants of beta-galactosidase with Valine and with Glutamine replacing Glutamate-416 did not have a Mg(2+) bound at the active site even at high Mg(2+) concentrations (200 mM). They had low catalytic activity and the pH profiles were very different from those of the native enzyme. In addition, substrates, substrate analogs, transition state analogs and galactose bound very poorly. However, the orientation and conformation of the Mg(2+) ligands (residues 416, 418, and 461) as well as the B-factors of these three side chains did not change significantly. The structures, conformations and B-factors of other active site residues were also essentially unchanged. These studies show that the active site Mg(2+) is not necessary for structure and is, therefore, mainly important for modulating the chemistry and mediating the interactions between the active site components.

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Primary Citation of related structures