3I8W image
Deposition Date 2009-07-10
Release Date 2009-12-01
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3I8W
Title:
Crystal structure of a metallacarborane inhibitor bound to HIV protease
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protease
Gene (Uniprot):gag-pol
Mutagens:Q7K, L33I, L63I
Chain IDs:A
Chain Length:99
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1
Primary Citation
Design of HIV Protease Inhibitors Based on Inorganic Polyhedral Metallacarboranes
J.Med.Chem. 52 7132 7141 (2009)
PMID: 19874035 DOI: 10.1021/jm9011388

Abstact

HIV protease (HIV PR) is a primary target for anti-HIV drug design. We have previously identified and characterized substituted metallacarboranes as a new class of HIV protease inhibitors. In a structure-guided drug design effort, we connected the two cobalt bis(dicarbollide) clusters with a linker to substituted ammonium group and obtained a set of compounds based on a lead formula [H(2)N-(8-(C(2)H(4)O)(2)-1,2-C(2)B(9)H(10))(1',2'-C(2)B(9)H(11))-3,3'-Co)(2)]Na. We explored inhibition properties of these compounds with various substitutions, determined the HIV PR:inhibitor crystal structure, and computationally explored the conformational space of the linker. Our results prove the capacity of linker-substituted dual-cage cobalt bis(dicarbollides) as lead compounds for design of more potent inhibitors of HIV PR.

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Primary Citation of related structures
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