3I5W image
Deposition Date 2009-07-06
Release Date 2009-07-28
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3I5W
Title:
Crystal structure of human alpha-defensin 5 (mutant R13H)
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Defensin-5
Gene (Uniprot):DEFA5
Mutagens:R13H
Chain IDs:A, B
Chain Length:32
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Selective arginines are important for the antibacterial activity and host cell interaction of human alpha-defensin 5
Febs Lett. 583 2507 2512 (2009)
PMID: 19589339 DOI: 10.1016/j.febslet.2009.06.051

Abstact

Defensins constitute a major family of natural antimicrobial peptides that protect the host against microbial invasion. Here, we report on the antibacterial properties and cellular interaction of Human Defensin 5 as a function of its positive charge and hydrophobicity. We find that selective replacement of arginine residues in HD-5 by alanine or charge-neutral lysine residues reduces antibacterial killing as well as host cell interaction. We identify arginines at positions 9 and 28 in the HD-5 sequence as particularly important for its function. Replacement of arginine at position 13 to Histidine, as observed in a Crohn's disease patient, reduced bacterial killing strain-selectively. Finally, we find that HD-5 interacts with host cells via receptor-mediated mechanisms.

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Primary Citation of related structures
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