3I0W image
Deposition Date 2009-06-25
Release Date 2009-09-29
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3I0W
Title:
Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.73 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:8-oxoguanine-DNA-glycosylase
Gene (Uniprot):CA_C2707
Mutagens:K222Q
Chain IDs:A
Chain Length:290
Number of Molecules:1
Biological Source:Clostridium acetobutylicum
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*AP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*A)-3'
Chain IDs:C
Chain Length:12
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
8OG B DG ?
Primary Citation
Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase.
Dna Repair 8 1283 1289 (2009)
PMID: 19747886 DOI: 10.1016/j.dnarep.2009.08.002

Abstact

7,8-Dihydro-8-oxoguanine (8-oxoG) is the major oxidative product of guanine and the most prevalent base lesion observed in DNA molecules. Because 8-oxoG has the capability to form a Hoogsteen pair with adenine (8-oxoG:A) in addition to a normal Watson-Crick pair with cytosine (8-oxoG:C), this lesion can lead to a G:C-->T:A transversion after replication. However, 8-oxoG is recognized and excised by the 8-oxoguanine DNA glycosylase (Ogg) of the base excision repair pathway. Members of the Ogg1 family usually display a strong preference for a C opposite the lesion. In contrast, the atypical Ogg1 from Clostridium actetobutylicum (CacOgg) can excise 8-oxoG when paired with either one of the four bases, albeit with a preference for C and A. Here we describe the first high-resolution crystal structures of CacOgg in complex with duplex DNA containing the 8-oxoG lesion paired to cytosine and to adenine. A structural comparison with human OGG1 provides a rationale for the lack of opposite base specificity displayed by the bacterial Ogg.

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Protein

Chemical

Disease

Primary Citation of related structures
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