3HXI image
Deposition Date 2009-06-20
Release Date 2009-08-25
Last Version Date 2023-09-06
Entry Detail
PDB ID:
3HXI
Keywords:
Title:
Crystal structure of Schistosome eIF4E complexed with m7GpppG and 4E-BP
Biological Source:
Source Organism:
Schistosoma mansoni (Taxon ID: 6183)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Eukaryotic Translation Initiation 4E
Chain IDs:A
Chain Length:189
Number of Molecules:1
Biological Source:Schistosoma mansoni
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 4E-binding protein 1
Gene (Uniprot):EIF4EBP1
Chain IDs:B (auth: C)
Chain Length:21
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into parasite EIF4E binding specificity for m7G and m2,2,7G mRNA cap.
J.Biol.Chem. 284 31336 31349 (2009)
PMID: 19710013 DOI: 10.1074/jbc.M109.049858

Abstact

The eukaryotic translation initiation factor eIF4E recognizes the mRNA cap, a key step in translation initiation. Here we have characterized eIF4E from the human parasite Schistosoma mansoni. Schistosome mRNAs have either the typical monomethylguanosine (m(7)G) or a trimethylguanosine (m(2,2,7)G) cap derived from spliced leader trans-splicing. Quantitative fluorescence titration analyses demonstrated that schistosome eIF4E has similar binding specificity for both caps. We present the first crystal structure of an eIF4E with similar binding specificity for m(7)G and m(2,2,7)G caps. The eIF4E.m(7)GpppG structure demonstrates that the schistosome protein binds monomethyl cap in a manner similar to that of single specificity eIF4Es and exhibits a structure similar to other known eIF4Es. The structure suggests an alternate orientation of a conserved, key Glu-90 in the cap-binding pocket that may contribute to dual binding specificity and a position for mRNA bound to eIF4E consistent with biochemical data. Comparison of NMR chemical shift perturbations in schistosome eIF4E on binding m(7)GpppG and m(2,2,7)GpppG identified key differences between the two complexes. Isothermal titration calorimetry demonstrated significant thermodynamics differences for the binding process with the two caps (m(7)G versus m(2,2,7)G). Overall the NMR and isothermal titration calorimetry data suggest the importance of intrinsic conformational flexibility in the schistosome eIF4E that enables binding to m(2,2,7)G cap.

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