3HQV image
Entry Detail
PDB ID:
3HQV
Title:
Low resolution, molecular envelope structure of type I collagen in situ determined by fiber diffraction. Single type I collagen molecule, rigid body refinement
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2009-06-08
Release Date:
2009-07-14
Method Details:
Experimental Method:
Resolution:
5.16 Å
R-Value Observed:
0.06
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Collagen alpha-1(I) chain
Chain IDs:A, C
Chain Length:1056
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Collagen alpha-2(I) chain
Chain IDs:B
Chain Length:1028
Number of Molecules:1
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HYP A PRO 4-HYDROXYPROLINE
LYZ A LYS 5-HYDROXYLYSINE
Ligand Molecules
Primary Citation
Microfibrillar Structure of Type I Collagen in Situ
Proc.Natl.Acad.Sci.USA 103 9001 9005 (2006)
PMID: 16751282 DOI: 10.1073/pnas.0502718103

Abstact

The fibrous collagens are ubiquitous in animals and form the structural basis of all mammalian connective tissues, including those of the heart, vasculature, skin, cornea, bones, and tendons. However, in comparison with what is known of their production, turnover and physiological structure, very little is understood regarding the three-dimensional arrangement of collagen molecules in naturally occurring fibrils. This knowledge may provide insight into key biological processes such as fibrillo-genesis and tissue remodeling and into diseases such as heart disease and cancer. Here we present a crystallographic determination of the collagen type I supermolecular structure, where the molecular conformation of each collagen segment found within the naturally occurring crystallographic unit cell has been defined (P1, a approximately 40.0 A, b approximately 27.0 A, c approximately 678 A, alpha approximately 89.2 degrees , beta approximately 94.6 degrees , gamma approximately 105.6 degrees ; reflections: 414, overlapping, 232, and nonoverlapping, 182; resolution, 5.16 A axial and 11.1 A equatorial). This structure shows that the molecular packing topology of the collagen molecule is such that packing neighbors are arranged to form a supertwisted (discontinuous) right-handed microfibril that interdigitates with neighboring microfibrils. This interdigitation establishes the crystallographic superlattice, which is formed of quasihexagonally packed collagen molecules. In addition, the molecular packing structure of collagen shown here provides information concerning the potential modes of action of two prominent molecules involved in human health and disease: decorin and the Matrix Metallo-Proteinase (MMP) collagenase.

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Primary Citation of related structures