3HQN image
Deposition Date 2009-06-08
Release Date 2010-02-16
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3HQN
Keywords:
Title:
Apo crystal structure of Leishmania mexicana(LmPYK)pyruvate kinase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Pyruvate kinase
Gene (Uniprot):PYK
Chain IDs:A (auth: D), B (auth: A)
Chain Length:499
Number of Molecules:2
Biological Source:Leishmania mexicana
Primary Citation
The allosteric mechanism of pryuvate kinase from Leishmania mexicana: a rock and lock model
J.Biol.Chem. 285 12892 12898 (2010)
PMID: 20123988 DOI: 10.1074/jbc.M109.079905

Abstact

Allosteric regulation provides a rate management system for enzymes involved in many cellular processes. Ligand-controlled regulation is easily recognizable, but the underlying molecular mechanisms have remained elusive. We have obtained the first complete series of allosteric structures, in all possible ligated states, for the tetrameric enzyme, pyruvate kinase, from Leishmania mexicana. The transition between inactive T-state and active R-state is accompanied by a simple symmetrical 6 degrees rigid body rocking motion of the A- and C-domain cores in each of the four subunits. However, formation of the R-state in this way is only part of the mechanism; eight essential salt bridge locks that form across the C-C interface provide tetramer rigidity with a coupled 7-fold increase in rate. The results presented here illustrate how conformational changes coupled with effector binding correlate with loss of flexibility and increase in thermal stability providing a general mechanism for allosteric control.

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