3HM6 image
Deposition Date 2009-05-28
Release Date 2009-06-09
Last Version Date 2024-04-03
Entry Detail
PDB ID:
3HM6
Title:
Crystal structure of the cytoplasmic domain of human plexin B1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Unknown peptide
Chain IDs:B (auth: C)
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Plexin-B1
Gene (Uniprot):PLXNB1
Mutagens:S1625T
Chain IDs:A (auth: X)
Chain Length:644
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure and function of the intracellular region of the plexin-b1 transmembrane receptor.
J.Biol.Chem. 284 35962 35972 (2009)
PMID: 19843518 DOI: 10.1074/jbc.M109.056275

Abstact

Members of the plexin family are unique transmembrane receptors in that they interact directly with Rho family small GTPases; moreover, they contain a GTPase-activating protein (GAP) domain for R-Ras, which is crucial for plexin-mediated regulation of cell motility. However, the functional role and structural basis of the interactions between the different intracellular domains of plexins remained unclear. Here we present the 2.4 A crystal structure of the complete intracellular region of human plexin-B1. The structure is monomeric and reveals that the GAP domain is folded into one structure from two segments, separated by the Rho GTPase binding domain (RBD). The RBD is not dimerized, as observed previously. Instead, binding of a conserved loop region appears to compete with dimerization and anchors the RBD to the GAP domain. Cell-based assays on mutant proteins confirm the functional importance of this coupling loop. Molecular modeling based on structural homology to p120(GAP).H-Ras suggests that Ras GTPases can bind to the plexin GAP region. Experimentally, we show that the monomeric intracellular plexin-B1 binds R-Ras but not H-Ras. These findings suggest that the monomeric form of the intracellular region is primed for GAP activity and extend a model for plexin activation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures