3HI1 image
Deposition Date 2009-05-18
Release Date 2009-11-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
3HI1
Title:
Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glycoprotein 120
Gene (Uniprot):env
Chain IDs:A (auth: G), D (auth: J)
Chain Length:321
Number of Molecules:2
Biological Source:Human immunodeficiency virus type 1
Polymer Type:polypeptide(L)
Molecule:F105 Heavy Chain
Chain IDs:C (auth: H), F (auth: B)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F105 Light Chain
Chain IDs:B (auth: L), E (auth: A)
Chain Length:215
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural basis of immune evasion at the site of CD4 attachment on HIV-1 gp120.
Science 326 1123 1127 (2009)
PMID: 19965434 DOI: 10.1126/science.1175868

Abstact

The site on HIV-1 gp120 that binds to the CD4 receptor is vulnerable to antibodies. However, most antibodies that interact with this site cannot neutralize HIV-1. To understand the basis of this resistance, we determined co-crystal structures for two poorly neutralizing, CD4-binding site (CD4BS) antibodies, F105 and b13, in complexes with gp120. Both antibodies exhibited approach angles to gp120 similar to those of CD4 and a rare, broadly neutralizing CD4BS antibody, b12. Slight differences in recognition, however, resulted in substantial differences in F105- and b13-bound conformations relative to b12-bound gp120. Modeling and binding experiments revealed these conformations to be poorly compatible with the viral spike. This incompatibility, the consequence of slight differences in CD4BS recognition, renders HIV-1 resistant to all but the most accurately targeted antibodies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures