3HFZ image
Entry Detail
PDB ID:
3HFZ
Keywords:
Title:
Crystal structure of Thermus thermophilus Phenylalanyl-tRNA synthetase complexed with m-tyrosine
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2009-05-13
Release Date:
2009-07-21
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phenylalanyl-tRNA synthetase alpha chain
Chain IDs:A
Chain Length:350
Number of Molecules:1
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:Phenylalanyl-tRNA synthetase beta chain
Chain IDs:B
Chain Length:785
Number of Molecules:1
Biological Source:Thermus thermophilus
Ligand Molecules
Primary Citation
Eukaryotic cytosolic and mitochondrial phenylalanyl-tRNA synthetases catalyze the charging of tRNA with the meta-tyrosine
Proc.Natl.Acad.Sci.USA 106 11045 11048 (2009)
PMID: 19549855 DOI: 10.1073/pnas.0905212106

Abstact

The accumulation of proteins damaged by reactive oxygen species (ROS), conventionally regarded as having pathological potentials, is associated with age-related diseases such as Alzheimer's, atherosclerosis, and cataractogenesis. Exposure of the aromatic amino acid phenylalanine to ROS-generating systems produces multiple isomers of tyrosine: m-tyrosine (m-Tyr), o-tyrosine (o-Tyr), and the standard p-tyrosine (Tyr). Previously it was demonstrated that exogenously supplied, oxidized amino acids could be incorporated into bacterial and eukaryotic proteins. It is, therefore, likely that in many cases, in vivo-damaged amino acids are available for de novo synthesis of proteins. Although the involvement of aminoacyl-tRNA synthetases in this process has been hypothesized, the specific pathway by which ROS-damaged amino acids are incorporated into proteins remains unclear. We provide herein evidence that mitochondrial and cytoplasmic phenylalanyl-tRNA synthetases (HsmtPheRS and HsctPheRS, respectively) catalyze direct attachment of m-Tyr to tRNA(Phe), thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into eukaryotic proteins. Crystal complexes of mitochondrial and bacterial PheRSs with m-Tyr reveal the net of highly specific interactions within the synthetic and editing sites.

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Primary Citation of related structures