3HCM image
Deposition Date 2009-05-06
Release Date 2010-02-02
Last Version Date 2023-11-01
Entry Detail
PDB ID:
3HCM
Title:
Crystal structure of human S100B in complex with S45
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.31
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein S100-B
Gene (Uniprot):S100B
Chain IDs:A, B
Chain Length:92
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Fragmenting the S100B-p53 Interaction: Combined Virtual/Biophysical Screening Approaches to Identify Ligands
Chemmedchem 5 428 435 (2010)
PMID: 20077460 DOI: 10.1002/cmdc.200900393

Abstact

S100B contributes to cell proliferation by binding the C terminus of p53 and inhibiting its tumor suppressor function. The use of multiple computational approaches to screen fragment libraries targeting the human S100B-p53 interaction site is reported. This in silico screening led to the identification of 280 novel prospective ligands. NMR spectroscopic experiments revealed specific binding at the p53 interaction site for a set of these compounds and confirmed their potential for further rational optimization. The X-ray crystal structure determined for one of the binders revealed key intermolecular interactions, thus paving the way for structure-based ligand optimization.

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Primary Citation of related structures